For an updated list of publications, visit my Google Scholars page

2026

TBD

2025

Wang, Y., Ma, A., Song, NJ. et al. Proteotoxic stress response drives T cell exhaustion and immune evasion. Nature. 647, 1025–1035 (2025). https://doi.org/10.1038/s41586-025-09539-1

Ghosh, G., Shannon, A. E., & Searle, B. C. (2025). Data acquisition approaches for single cell proteomics. Proteomics, 25, e2400022. https://doi.org/10.1002/pmic.202400022

Shannon, A.E., Teodorescu, R.N., Song, N.J. et al. Rapid assay development for low input targeted proteomics using a versatile linear ion trap. Nat Commun. 16, 3794 (2025). https://doi.org/10.1038/s41467-025-58757-8

Phlairaharn, Teeradon et al. “Improving Proteomic Dynamic Range with Multiple Accumulation Precursor Mass Spectrometry.” Journal of proteome research vol. 24,10 (2025): 5116-5126. doi:10.1021/acs.jproteome.5c00469

2024

Ariana E. Shannon, Rachael N. Teodorescu, Nojoon Soon, Lilian R. Heil, Cristina C. Jacob, Philip M. Remes, Mark P. Rubinstein, Brian C. Searle. A workflow for targeted proteomics assay development using a versatile linear ion trap. bioRxiv 2024.05.31.596891; Published 2024 May 31. doi: https://doi.org/10.1101/2024.05.31.596891

Shannon AE, Boos CE, Searle BC, Hummon AB. Gas-Phase Fractionation Data-Independent Acquisition Analysis of 3D Cocultured Spheroid Tumor Model Reveals Altered Translational Processes and Signaling Using Proteomics. J Proteome Res. Published online 2024 Feb 2. doi:10.1021/acs.jproteome.3c00786

2023

Searle BC, Shannon AE, Wilburn DB. Scribe: Next Generation Library Searching for DDA Experiments. J Proteome Res. 2023;22(2):482-490. doi:10.1021/acs.jproteome.2c00672

Wilburn DB, Shannon AE, Spicer V, et al. Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications. Preprint. bioRxiv. 2023;2023.05.30.542978. Published 2023 Jun 2. doi:10.1101/2023.05.30.542978

2021

Shannon AE, Boos CE, Hummon AB. Co-culturing multicellular tumor models: Modeling the tumor microenvironment and analysis techniques. Proteomics. 2021;21(9):e2000103. doi:10.1002/pmic.202000103